Document & File Management

The Compliant Document Management System
Your Lab Actually Needs

Stop wrestling with SharePoint, shared drives, and ad-hoc file systems that can't pass an FDA inspection. CERF ELN is a purpose-built 21 CFR Part 11 and GLP-compliant document and file management platform for regulated laboratories — with true audit trails, PKI digital signatures, and ultra-long-term archiving built in from day one.

21 CFR Part 11 GLP / GXP Ready PKI Digital Signatures Cloud, On-Prem or Sealed LAN IQ / OQ Validation Support

CERF Replaces All of These

Most regulated labs manage documents across a patchwork of tools that were never built for compliance. CERF consolidates them into a single auditable system.

Microsoft SharePoint & Teams file stores
Shared network drives & file servers
Dropbox, Google Drive & OneDrive
Evernote, OneNote & ad-hoc notebooks
Standalone LIMS document modules
Multiple disconnected ELN + EDMS systems
Homegrown document management systems
Paper lab notebooks and filing cabinets

SharePoint Was Not Built for Your Compliance Needs

Consumer and enterprise file management tools share a critical flaw: they were never designed with FDA inspections, GLP audits, or 21 CFR Part 11 requirements in mind. Here is what that costs regulated labs.

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No Immutable Audit Trail

SharePoint logs can be deleted or altered by administrators. A compliant audit trail must be computer-generated, time-stamped, and impossible to modify from within the system — a foundational requirement of 21 CFR 11.10(e).

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Weak Electronic Signatures

Clicking "approve" in SharePoint is not an electronic signature under 21 CFR Part 11. Compliant signatures must be unique, non-repudiable, and cryptographically linked to the signed record — not just a checkbox.

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No Permanent Version Retention

SharePoint version histories can be purged. GLP and 21 CFR Part 11 require that all previous versions of a record remain available for the life of the study — which for many organizations means indefinitely.

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Validation Is Extremely Difficult

Validating SharePoint for 21 CFR Part 11 compliance is a notoriously complex and expensive undertaking. Most labs end up with a fragile system that drifts out of compliance with every Microsoft update.

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Insufficient Access Controls

Controlling access in SharePoint at the granular level required by GLP — where users in search results only see what they're specifically authorized to see — requires complex, brittle configuration that rarely holds.

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Inspection-Ready Exports Are Missing

When an FDA inspector asks for a complete, human-readable record of a study, SharePoint cannot generate it. CERF exports a complete, structured, digitally-signed record package on demand.

Everything a Regulated Laboratory Needs. In One System.

CERF combines the functions of an EDMS, ELN, SOP management system, and semantic file manager — all with the compliance infrastructure required by 21 CFR Part 11 and GLP.

01

Immutable Audit Trail

Every action — file creation, edit, access, deletion attempt, signature event — is captured in a secure, computer-generated, time-stamped audit trail that cannot be modified or deleted from within the system. Fully exportable for regulatory inspection.

02

True PKI Digital Signatures

CERF is the only ELN that uses genuine Public Key Infrastructure (PKI) hashing — applying the U.S. federal government's Digital Signature Algorithm (DSA). Signatures are cryptographically linked to their records and cannot be transferred or falsified.

03

Permanent Version Control

No version of any document is ever deleted in CERF. All previous versions, including deleted content, remain available for inspection. Changes are visible and the original entry is never obscured — a core requirement of 21 CFR 11.10(e).

04

Granular Role-Based Access Control

Control access at the workgroup, project, folder, and individual record level. Unauthorized users cannot even see a record exists in search results — ensuring complete data confidentiality across concurrent studies and client projects.

05

Semantic Search Engine

CERF's search engine understands metadata, relationships between files, and the meaning of scientific content — not just filename keywords. Find anything in seconds across your entire archive, with results filtered by your access permissions.

06

SOP & Controlled Document Management

Manage Standard Operating Procedures with full version control, approval workflows, and controlled distribution. Ensure your lab always works from the current approved version, with a complete history of every SOP revision and user acknowledgment.

07

Store Any File Format

CERF stores, indexes, and previews virtually any file type — raw instrument data, proprietary scientific formats, images, PDFs, spreadsheets, videos, DICOM, CML chemistry structures, biological sequence files, and more. Drag entire folder trees from your desktop directly into CERF.

08

Image Thumbnails in Tables CERF 6

CERF 6 extends the table tool to allow image thumbnails in table cells — enabling structured specimen registries, image grids, and visual data tables where each row contains a preview, metadata, and linked documents in a single auditable notebook entry.

09

Automated Metadata Extraction

CERF automatically extracts and indexes metadata from files at ingestion. Researchers can also add rich semantic annotations that carry forward for the lifetime of the record, ensuring future scientists can find and understand your data decades later.

10

Inspection-Ready Exports

Export complete notebooks, files, audit trails, signature records, and metadata packages as PDF or open-standard XML — ready for agency review, due diligence inspection, or data migration. The CERF Exporter handles bulk exports with a single operation.

11

Flexible Deployment

Deploy CERF in the cloud, on-premise on your own servers, or on a completely sealed LAN with no internet connectivity required. Choose MySQL, MS SQL, or Oracle as your database backend. Available perpetual licensing means your data remains accessible forever.

12

CERF Automaton & Email Capture

Automatically capture files generated by lab instruments, desktop applications, and email attachments directly into CERF — maintaining the complete chain of custody for every data file from the moment of creation, with no manual transfer steps.

CERF vs. SharePoint for Regulated Document Management

This comparison applies equally to Microsoft SharePoint, shared network drives, Google Drive, Dropbox, and other general-purpose file management tools.

Compliance Requirement CERF ELN SharePoint / Generic Tools
Immutable, computer-generated audit trail (21 CFR 11.10(e))
True PKI / DSA digital signatures
Signatures cryptographically linked to records (21 CFR 11.70)
Permanent version history — all versions retained indefinitely~ Add-on required
Granular role-based access (search results respect permissions)~ Complex config
SOP management with approval workflows~ Add-on required
Automated metadata extraction and semantic annotation
IQ / OQ validation support and documentation
Sealed LAN deployment (no internet required)
Inspection-ready PDF and XML record exports~ Manual / partial
Electronic lab notebook integrated with document management
Perpetual license — data accessible after subscription ends
Designed for 21 CFR Part 11 and GLP from the ground up

Built for Every Regulated Environment

CERF is trusted as a compliant document management system across a wide range of regulated industries and laboratory types.

Pharmaceutical & Biotech

Manage pre-clinical study records, regulatory submission files, SOPs, and IP documentation in a single 21 CFR Part 11 compliant system — ready for FDA inspection at any time.

GLP21 CFR Part 11IND/NDA Support

Histopathology & Digital Pathology Labs

Manage whole slide images, tissue specimen metadata, staining SOPs, and peer review sign-off in a single compliant system — with CERF 6's purpose-built histology workflows.

GLP21 CFR Part 11WSI Management

Contract Research Organizations

Manage concurrent, multi-client studies with complete data isolation. Give sponsors secure access to their data while keeping all other client records fully confidential.

Multi-ClientGLPAudit-Ready

Medical Device Manufacturers

Maintain design history files, risk documentation, and verification records in a compliant repository supporting 510(k) and PMA submissions.

FDAISO 13485DHF Management

Environmental & Chemical Labs

Store study plans, raw data, and final reports in a GLP-compliant system that meets OECD and EPA requirements for environmental safety data.

GLPOECDEPA Compliant

Academic & Government Research

Protect intellectual property, support patent applications, and maintain FAIR-compliant research data with permanent, auditable records that establish clear provenance.

IP ProtectionFAIR DataNSPM-33

Frequently Asked Questions

Common questions about laboratory document management and CERF.

Is SharePoint 21 CFR Part 11 compliant?
SharePoint is not inherently 21 CFR Part 11 compliant. It lacks several foundational requirements including an immutable computer-generated audit trail, true PKI digital signatures cryptographically linked to records, permanent version retention, and proper access controls that apply even to search results. While add-ons can partially address some gaps, the resulting system is typically expensive to configure, difficult to validate, and prone to falling out of compliance with every Microsoft update. Most compliance experts advise against attempting to validate SharePoint for regulated laboratory use.
What is the difference between an EDMS and an ELN?
An Electronic Document Management System (EDMS) manages the storage, retrieval, version control, and access control of documents and files. An Electronic Laboratory Notebook (ELN) is designed to capture the experimental data and scientific workflows that scientists generate during research. Regulated laboratories need both. CERF serves as both an ELN and a compliant EDMS in a single integrated system — so scientists can record experimental data, attach supporting files, manage SOPs, and maintain a complete document archive all within one compliant platform.
Can CERF manage non-scientific documents like contracts, HR records, or financial files?
Yes. CERF is a general-purpose compliant document management system that also happens to be an industry-leading ELN. It has been used by organizations to manage legal agreements, IP documentation, due diligence records, investor agreements, and other business-critical documents. Any organization that needs a compliant, auditable, long-term document archive can benefit from CERF — not only scientific labs.
How does CERF handle data migration from SharePoint or shared drives?
CERF supports drag-and-drop import of entire folder trees, making it straightforward to migrate existing documents from SharePoint, shared drives, or local file systems. Metadata can be added to migrated files at the time of import. Note that compliance documentation — audit trails, digital signatures — applies to records from the date of ingestion into CERF forward. Legacy records migrate as files, not as historically signed and audited records.
What happens to our data if we stop using CERF?
CERF offers perpetual user licenses. Your data remains accessible even if you discontinue annual support, even if Lab-Ally ceases operations, and even on a sealed LAN with no internet access. Data is stored as native files in a secure file system — not compressed into a proprietary database format — meaning your IT team can always extract files in their original format. The CERF Exporter also provides bulk export of all data and metadata in hierarchical, open-standard format at any time.
How long does it take to deploy CERF?
A basic CERF deployment can be completed in days. A full enterprise deployment with custom workgroup configuration, SOP workflow setup, and IQ/OQ validation typically takes four to twelve weeks, depending on the complexity of your organization and compliance requirements. Lab-Ally provides project management and technical support throughout the deployment process.

Ready to Replace Non-Compliant File Management?

Talk to a CERF specialist about your organization's document management requirements. We'll show you exactly how CERF addresses your compliance needs, deployment constraints, and workflow — no generic demos.